2YT7 Protein Transport date Apr 05, 2007
title Solution Structure Of The Pdz Domain Of Amyloid Beta A4 Precursor Protein-Binding Family A Member 3
authors W.Dang, Y.Muto, M.Inoue, T.Kigawa, M.Shirouzu, T.Tarada, M.Seiki, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Amyloid Beta A4 Precursor Protein-Binding Family A Member 3;
Chain: A
Fragment: Pdz Domain
Synonym: Neuron-Specific X11l2 Protein, Neuronal Munc18-1- Interacting Protein 3, Mint-3, Adapter Protein X11gamma;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apba3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P061127-21
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (483 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2YT7
  • Original NMR restraints for 2YT7 from PDB
  • Retrieve 2YT7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YT7 from S2C, [Save to disk]
  • View 2YT7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YT7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YT7, from MSDmotif at EBI
  • Fold representative 2yt7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yt7] [2yt7_A]
  • SWISS-PROT database: [O96018]
  • Domain organization of [APBA3_HUMAN] by SWISSPFAM
  • Domain found in 2YT7: [PDZ ] by SMART
  • Alignments of the sequence of 2YT7 with the sequences similar proteins can be viewed for 2YT7's classification [APBA3_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [APBA3_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2YT7
  • Community annotation for 2YT7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science