2YT9 Transcription date Apr 05, 2007
title Solution Structure Of C2h2 Type Zinc Finger Domain 345 In Zinc Finger Protein 278
authors N.Kasahara, K.Tsuda, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Zinc Finger-Containing Protein 1
Chain: A
Fragment: C2h2 Domain
Synonym: Zinc Finger Protein 278, Zinc Finger Sarcoma Gene Protein, Btb-Poz Domain Zinc Finger Transcription Factor, Protein Kinase A Ri-Subunit Alpha- Associated Protein, Zinc Finger And Btb Domain-Containing Protein 19;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Patz, Riaz, Zbtb19, Znf278, Zsg
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P060718-20
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (484 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2YT9
  • CSU: Contacts of Structural Units for 2YT9
  • Original NMR restraints for 2YT9 from PDB
  • Retrieve 2YT9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YT9 from S2C, [Save to disk]
  • View 2YT9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YT9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YT9, from MSDmotif at EBI
  • Fold representative 2yt9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yt9_A] [2yt9]
  • SWISS-PROT database: [Q9HBE1]
  • Domain organization of [PATZ1_HUMAN] by SWISSPFAM
  • Domain found in 2YT9: [ZnF_C2H2 ] by SMART
  • Other resources with information on 2YT9
  • Community annotation for 2YT9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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