2YTY Rna Binding Protein date Apr 05, 2007
title Solution Structure Of The Fourth Cold-Shock Domain Of The Hu Kiaa0885 Protein (Unr Protein)
authors A.K.Goroncy, T.Tomizawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Cold Shock Domain-Containing Protein E1
Chain: A
Fragment: Fourth Cold-Shock Domain
Synonym: Unr Protein, N-Ras Upstream Gene Protein
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa0885
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P040114-51
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe NMR solution structures of the five constituent cold-shock domains (CSD) of the human UNR (upstream of N-ras) protein., Goroncy AK, Koshiba S, Tochio N, Tomizawa T, Inoue M, Watanabe S, Harada T, Tanaka A, Ohara O, Kigawa T, Yokoyama S, J Struct Funct Genomics. 2010 Jun;11(2):181-8. Epub 2010 Mar 6. PMID:20213426
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (440 Kb) [Save to disk]
  • Biological Unit Coordinates (2yty.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2YTY
  • Original NMR restraints for 2YTY from PDB
  • Retrieve 2YTY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YTY from S2C, [Save to disk]
    • View 2YTY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YTY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YTY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yty_A] [2yty]
  • SWISS-PROT database: [O75534]
  • Domain organization of [CSDE1_HUMAN] by SWISSPFAM
  • Domain found in 2YTY: [CSP ] by SMART
    • Other resources with information on 2YTY
  • Community annotation for 2YTY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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