2YUU Transferase date Apr 06, 2007
title Solution Structure Of The First Phorbol Estersdiacylglycerol Binding Domain Of Human Protein Kinase C, Delta
authors H.Abe, K.Miyamoto, N.Tochio, K.Saito, A.Sasagawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Protein Kinase C Delta Type
Chain: A
Fragment: Phorbol Estersdiacylglycerol Binding Domain (C1 Domain);
Synonym: Npkc-Delta
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prkcd
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P050302-69
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme Transferase E.C. BRENDA
subcellular loc. Membrane localization by OPM: Nuclear outer membrane

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (418 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 2YUU
  • CSU: Contacts of Structural Units for 2YUU
  • Original NMR restraints for 2YUU from PDB
  • Retrieve 2YUU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YUU from S2C, [Save to disk]
  • View 2YUU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YUU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YUU, from MSDmotif at EBI
  • Fold representative 2yuu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yuu_A] [2yuu]
  • SWISS-PROT database: [Q05655]
  • Domain organization of [KPCD_HUMAN] by SWISSPFAM
  • Domain found in 2YUU: [C1 ] by SMART
  • Other resources with information on 2YUU
  • Community annotation for 2YUU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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