2YVI Cell Adhesion date Apr 12, 2007
title Crystal Structure Of A Death Domain Of Human Ankryn Protein
authors Ihsanawati, Y.Bessho, L.Chen, Z.J.Liu, B.C.Wang, M.Shirouzu, S.Yok Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Ankyrin-1
Chain: A
Fragment: Unp Residues 1394-1497, Death Domain
Synonym: Erythrocyte Ankyrin, Ankyrin-R, Death Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ank1, Ank
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pk060123-20
Other_details: Cell Free System
symmetry Space Group: P 61 2 2
R_factor 0.198 R_Free 0.217
length a length b length c angle alpha angle beta angle gamma
46.630 46.630 145.150 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.92 Å
ligand GOL enzyme

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (2yvi.pdb1.gz) 17 Kb
  • Biological Unit Coordinates (2yvi.pdb2.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 2YVI
  • CSU: Contacts of Structural Units for 2YVI
  • Likely Quarternary Molecular Structure file(s) for 2YVI
  • Structure Factors (67 Kb)
  • Retrieve 2YVI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YVI from S2C, [Save to disk]
  • Re-refined 2yvi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YVI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YVI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YVI, from MSDmotif at EBI
  • Fold representative 2yvi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yvi] [2yvi_A]
  • SWISS-PROT database: [P16157]
  • Belongs to the ankyrin (ankyrin) family according to TCDB.
  • Domain organization of [ANK1_HUMAN] by SWISSPFAM
  • Domain found in 2YVI: [DEATH ] by SMART
  • Other resources with information on 2YVI
  • Community annotation for 2YVI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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