2YW8	Metal Binding Protein	date	Apr 20, 2007
title	Crystal Structure Of Human Run And Fyve Domain-Containing Pr
authors	H.Wang, S.Kishishita, K.Murayama, C.Takemoto, T.Terada, M.Shirouz Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Run And Fyve Domain-Containing Protein 1 Chain: A Fragment: Unp Residues 627-708 Synonym: Fyve-Finger Protein Eip1, Zinc Finger Fyve Domain- Protein 12, La-Binding Protein 1, Rab4-Interacting Protein, Protein; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Rufy1, Rabip4, Zfyve12 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pk060327-08 Other_details: Cell-Free Protein Synthesis
symmetry	Space Group: P 43 3 2	R_factor 0.198 R_Free 0.224
crystal cell	length a length b length c angle alpha angle beta angle gamma 115.150 115.150 115.150 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	SO4, ZN	enzyme
note	2YW8 is a representative structure
Gene Ontology	Chain Function Process Component A

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk] Biological Unit Coordinates (2yw8.pdb1.gz) 11 Kb LPC: Ligand-Protein Contacts for 2YW8 CSU: Contacts of Structural Units for 2YW8 Likely Quarternary Molecular Structure file(s) for 2YW8 Structure Factors (37 Kb) Retrieve 2YW8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2YW8 from S2C, [Save to disk] Re-refined 2yw8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2YW8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2YW8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2YW8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2yw8] [2yw8_A] SWISS-PROT database: [Q96T51] Domain organization of [RUFY1_HUMAN] by SWISSPFAM Domain found in 2YW8: [FYVE ] by SMART

Other resources with information on 2YW8

Community annotation for 2YW8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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