2YWO Structural Genomics, Unknown Function date Apr 20, 2007
title Crystal Structure Of Reduced Thioredoxin-Like Protein From T Thermophilus Hb8
authors A.Ebihara, M.Manzoku, S.Yokoyama, S.Kuramitsu, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Probable Thiol-Disulfide Isomerasethioredoxin
Chain: A
Synonym: Thioredoxin-Like Protein
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11a
symmetry Space Group: P 41 21 2
R_factor 0.215 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.490 73.490 97.620 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • antioxidant activity


    • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (2ywo.pdb1.gz) 34 Kb
  • LPC: Ligand-Protein Contacts for 2YWO
  • CSU: Contacts of Structural Units for 2YWO
  • Likely Quarternary Molecular Structure file(s) for 2YWO
  • Structure Factors (169 Kb)
  • Retrieve 2YWO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YWO from S2C, [Save to disk]
  • Re-refined 2ywo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2YWO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2YWO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2YWO, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ywo_A] [2ywo]
  • SWISS-PROT database: [Q5SKQ0]
  • Domain organization of [Q5SKQ0_THET8] by SWISSPFAM
    • Other resources with information on 2YWO
  • Community annotation for 2YWO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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