2YY0 Transcription date Apr 27, 2007
title Crystal Structure Of Ms0802, C-Myc-1 Binding Protein Domain From Homo Sapiens
authors Y.Xie, H.Wang, Ihsanawati, S.Kishishita, C.Takemoto, M.Shirozu, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: C-Myc-Binding Protein
Chain: A, B, C, D
Fragment: Unp Residues 42-94
Synonym: Associate Of Myc 1, Amy-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cell Free Protein Synthesis
Expression_system_vector: Plasmid
Expression_system_plasmid: Pk060110-05-Md01
symmetry Space Group: H 3
R_factor 0.244 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.634 59.634 194.868 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (2yy0.pdb1.gz) 16 Kb
  • Biological Unit Coordinates (2yy0.pdb2.gz) 16 Kb
  • Biological Unit Coordinates (2yy0.pdb3.gz) 93 Kb
  • CSU: Contacts of Structural Units for 2YY0
  • Likely Quarternary Molecular Structure file(s) for 2YY0
  • Structure Factors (89 Kb)
  • Retrieve 2YY0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YY0 from S2C, [Save to disk]
  • Re-refined 2yy0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YY0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YY0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YY0, from MSDmotif at EBI
  • Fold representative 2yy0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yy0_B] [2yy0_C] [2yy0_D] [2yy0] [2yy0_A]
  • SWISS-PROT database: [Q99417]
  • Domain organization of [MYCBP_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2YY0 with the sequences similar proteins can be viewed for 2YY0's classification [MYCBP_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [MYCBP_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2YY0
  • Community annotation for 2YY0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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