2YYN Transcription date Apr 30, 2007
title Crystal Sturcture Of Human Bromodomain Protein
authors S.Kishishita, T.Uchikubo-Kamo, K.Murayama, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Transcription Intermediary Factor 1-Alpha
Chain: A, B, C, D
Fragment: Bromo Domain
Synonym: Tif1-Alpha, Tripartite Motif-Containing Protein 24, Ring Finger Protein 82;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Trim24, Rnf82, Tif1, Tif1a
Expression_system: Cell-Free Protein Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pk050711-18
symmetry Space Group: P 21 21 21
R_factor 0.239 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.855 76.160 107.599 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (2yyn.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (2yyn.pdb2.gz) 39 Kb
  • Biological Unit Coordinates (2yyn.pdb3.gz) 41 Kb
  • Biological Unit Coordinates (2yyn.pdb4.gz) 39 Kb
  • CSU: Contacts of Structural Units for 2YYN
  • Likely Quarternary Molecular Structure file(s) for 2YYN
  • Structure Factors (315 Kb)
  • Retrieve 2YYN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2YYN from S2C, [Save to disk]
  • Re-refined 2yyn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2YYN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2YYN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2YYN, from MSDmotif at EBI
  • Fold representative 2yyn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2yyn_D] [2yyn_C] [2yyn] [2yyn_B] [2yyn_A]
  • SWISS-PROT database: [O15164]
  • Domain organization of [TIF1A_HUMAN] by SWISSPFAM
  • Domain found in 2YYN: [BROMO ] by SMART
  • Other resources with information on 2YYN
  • Community annotation for 2YYN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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