2Z0M Rna Binding Protein date May 07, 2007
title Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase Sulfolobus Tokodaii
authors N.Nakagawa, S.Kusano, M.Shirouzu, L.Chen, Z.Q.Fu, J.Chrzas, B.C. S.Yokoyama, S.Kuramitsu, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: 337aa Long Hypothetical Atp-Dependent Rna Helicas
Chain: A
Engineered: Yes
 Organism_scientific: Sulfolobus Tokodaii
Organism_taxid: 111955
Strain: Strain7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11a
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.985 87.216 108.258 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (2z0m.pdb1.gz) 58 Kb
  • CSU: Contacts of Structural Units for 2Z0M
  • Structure Factors (248 Kb)
  • Retrieve 2Z0M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z0M from S2C, [Save to disk]
  • Re-refined 2z0m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2Z0M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2Z0M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z0M, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z0m] [2z0m_A]
  • SWISS-PROT database: [Q96XQ7]
  • Domain organization of [Q96XQ7_SULTO] by SWISSPFAM
  • Domains found in 2Z0M: [DEXDc] [HELICc ] by SMART
    • Other resources with information on 2Z0M
  • Community annotation for 2Z0M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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