2Z0P Signaling Protein date May 07, 2007
title Crystal Structure Of Ph Domain Of Bruton'S Tyrosine Kinase
authors K.Murayama, M.Kato-Murayama, C.Mishima, M.Shirouzu, S.Yokoyama, R Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Tyrosine-Protein Kinase Btk
Chain: A, B, C, D
Fragment: Ph Domain
Synonym: Bruton Tyrosine Kinase, Agammaglobulinaemia Tyrosi Atk, B Cell Progenitor Kinase, Bpk;
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac
symmetry Space Group: P 1 21 1
R_factor 0.242 R_Free 0.300
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.417 62.499 117.064 90.00 94.33 90.00
method X-Ray Diffractionresolution 2.58 Å
ligand 4PT, ZN enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of the Bruton's tyrosine kinase PH domain with phosphatidylinositol., Murayama K, Kato-Murayama M, Mishima C, Akasaka R, Shirouzu M, Fukui Y, Yokoyama S, Biochem Biophys Res Commun. 2008 Dec 5;377(1):23-8. doi:, 10.1016/j.bbrc.2008.09.055. Epub 2008 Sep 20. PMID:18809383
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (2z0p.pdb1.gz) 29 Kb
  • Biological Unit Coordinates (2z0p.pdb2.gz) 31 Kb
  • Biological Unit Coordinates (2z0p.pdb3.gz) 29 Kb
  • Biological Unit Coordinates (2z0p.pdb4.gz) 30 Kb
  • Biological Unit Coordinates (2z0p.pdb5.gz) 57 Kb
  • Biological Unit Coordinates (2z0p.pdb6.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 2Z0P
  • CSU: Contacts of Structural Units for 2Z0P
  • Likely Quarternary Molecular Structure file(s) for 2Z0P
  • Structure Factors (204 Kb)
  • Retrieve 2Z0P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z0P from S2C, [Save to disk]
  • Re-refined 2z0p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z0P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z0P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z0P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z0p_C] [2z0p_A] [2z0p_B] [2z0p] [2z0p_D]
  • SWISS-PROT database: [Q06187]
  • Domain organization of [BTK_HUMAN] by SWISSPFAM
  • Domains found in 2Z0P: [BTK] [PH ] by SMART
  • Other resources with information on 2Z0P
  • Community annotation for 2Z0P at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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