2Z0U Lipid Binding Protein date May 07, 2007
title Crystal Structure Of C2 Domain Of Kibra Protein
authors K.Murayama, M.Kato-Murayama, T.Terada, M.Shirouzu, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Ww Domain-Containing Protein 1
Chain: A, B
Fragment: C2 Domain
Synonym: Kidney And Brain Protein, Kibra, Hbeag-Binding Protein 3;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cell Free Protein Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pk060110-34
symmetry Space Group: P 21 21 2
R_factor 0.220 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.456 88.928 36.698 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MSE enzyme
note 2Z0U is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2z0u.pdb1.gz) 23 Kb
  • Biological Unit Coordinates (2z0u.pdb2.gz) 23 Kb
  • Biological Unit Coordinates (2z0u.pdb3.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 2Z0U
  • CSU: Contacts of Structural Units for 2Z0U
  • Likely Quarternary Molecular Structure file(s) for 2Z0U
  • Structure Factors (119 Kb)
  • Retrieve 2Z0U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z0U from S2C, [Save to disk]
  • Re-refined 2z0u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2Z0U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2Z0U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z0U, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z0u_B] [2z0u_A] [2z0u]
  • SWISS-PROT database: [Q8IX03]
  • Domain organization of [KIBRA_HUMAN] by SWISSPFAM
    • Other resources with information on 2Z0U
  • Community annotation for 2Z0U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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