2Z13 Structural Genomics, Unknown Function date May 07, 2007
title Crystal Structure Of The N-Terminal Duf1126 In Human Ef-Hand
authors K.Saito, S.Kishishita, A.Nishino, K.Murayama, T.Terada, M.Shirouz T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics In (Rsgi)
compound source
Molecule: Ef-Hand Domain-Containing Family Member C2
Chain: A
Fragment: Unp Residues 71-190
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Efhc2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Px060518-19
Other_details: Cell-Free Protein Synthesis
symmetry Space Group: C 1 2 1
R_factor 0.181 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.460 35.280 39.150 90.00 112.64 90.00
method X-Ray Diffractionresolution 1.84 Å
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (2z13.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 2Z13
  • Structure Factors (141 Kb)
  • Retrieve 2Z13 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z13 from S2C, [Save to disk]
  • Re-refined 2z13 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z13 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z13
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z13, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z13_A] [2z13]
  • SWISS-PROT database: [Q5JST6]
  • Domain organization of [EFHC2_HUMAN] by SWISSPFAM
  • Domain found in 2Z13: [DM10 ] by SMART
  • Other resources with information on 2Z13
  • Community annotation for 2Z13 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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