2Z59 Protein Transport date Jul 01, 2007
title Complex Structures Of Mouse Rpn13 (22-130aa) And Ubiquitin
authors X.Chen, P.Schreiner, M.Groll, K.J.Walters
compound source
Molecule: Protein Adrm1
Chain: A
Fragment: Residues 22-130
Synonym: Proteasome Component Rpn13, Adhesion-Regulating Mo 110 Kda Cell Membrane Glycoprotein, Gp110, Arm-1;
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Adrm1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Prset

Molecule: Ubiquitin
Chain: B
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rps27a, Uba80, Ubcep1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pet
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUbiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction., Schreiner P, Chen X, Husnjak K, Randles L, Zhang N, Elsasser S, Finley D, Dikic I, Walters KJ, Groll M, Nature. 2008 May 22;453(7194):548-52. PMID:18497827
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (552 Kb) [Save to disk]
  • Biological Unit Coordinates (2z59.pdb1.gz) 55 Kb
  • CSU: Contacts of Structural Units for 2Z59
  • Original NMR restraints for 2Z59 from PDB
  • Retrieve 2Z59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z59 from S2C, [Save to disk]
    • View 2Z59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2Z59
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z59, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z59] [2z59_A] [2z59_B]
  • SWISS-PROT database: [Q9JKV1] [P62988]
  • Domain organization of [ADRM1_MOUSE] [UBIQ_HUMAN] by SWISSPFAM
  • Domain found in 2Z59: [UBQ ] by SMART
    • Other resources with information on 2Z59
  • Community annotation for 2Z59 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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