2Z5E Chaperone date Jul 06, 2007
title Crystal Structure Of Proteasome Assembling Chaperone 3
authors K.Okamoto, E.Kurimoto, E.Sakata, A.Suzuki, T.Yamane, Y.Hirano, S.M K.Tanaka, K.Kato
compound source
Molecule: Proteasome Assembling Chaperone 3
Chain: A, B
Synonym: Hypothetical Protein Mgc10911
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsf-Duet I
symmetry Space Group: P 43 21 2
R_factor 0.180 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.642 88.642 57.179 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of a chaperone complex that contributes to the assembly of yeast 20S proteasomes., Yashiroda H, Mizushima T, Okamoto K, Kameyama T, Hayashi H, Kishimoto T, Niwa S, Kasahara M, Kurimoto E, Sakata E, Takagi K, Suzuki A, Hirano Y, Murata S, Kato K, Yamane T, Tanaka K, Nat Struct Mol Biol. 2008 Mar;15(3):228-36. Epub 2008 Feb 17. PMID:18278057
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (2z5e.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 2Z5E
  • Likely Quarternary Molecular Structure file(s) for 2Z5E
  • Structure Factors (234 Kb)
  • Retrieve 2Z5E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z5E from S2C, [Save to disk]
  • Re-refined 2z5e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z5E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z5E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z5E, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z5e_B] [2z5e] [2z5e_A]
  • SWISS-PROT database: [Q9BT73]
  • Domain organization of [PSMG3_HUMAN] by SWISSPFAM
  • Other resources with information on 2Z5E
  • Community annotation for 2Z5E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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