2Z5S Cell Cycle date Jul 17, 2007
title Molecular Basis For The Inhibition Of P53 By Mdmx
authors G.M.Popowicz, A.Czarna, U.Rothweiler, A.Szwagierczak, T.A.Holak
compound source
Molecule: Mdm4 Protein
Chain: M, N, O
Fragment: Swib Domain
Synonym: Zebrafish Mdmx
Engineered: Yes
Organism_scientific: Danio Rerio
Organism_common: Zebrafish
Organism_taxid: 7955
Gene: Mdm4
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-46

Molecule: Cellular Tumor Antigen P53
Chain: P, Q, R
Fragment: Transactivation Domain
Synonym: Tumor Suppressor P53, Phosphoprotein P53, Antigen Ny-Co-13;
Engineered: Yes

Synthetic: Yes
Other_details: Rp Hplc Purified
symmetry Space Group: P 1 21 1
R_factor 0.247 R_Free 0.310
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.520 30.440 100.850 90.00 102.47 90.00
method X-Ray Diffractionresolution 2.30 Å
Primary referenceMolecular Basis for the Inhibition of p53 by Mdmx., Popowicz GM, Czarna A, Rothweiler U, Sszwagierczak A, Krajewski M, Weber L, Holak TA, Cell Cycle. 2007 Jul 12;6(19). PMID:17938582
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (2z5s.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (2z5s.pdb2.gz) 18 Kb
  • Biological Unit Coordinates (2z5s.pdb3.gz) 17 Kb
  • CSU: Contacts of Structural Units for 2Z5S
  • Likely Quarternary Molecular Structure file(s) for 2Z5S
  • Structure Factors (165 Kb)
  • Retrieve 2Z5S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z5S from S2C, [Save to disk]
  • Re-refined 2z5s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z5S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z5S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Z5S, from MSDmotif at EBI
  • Fold representative 2z5s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z5s] [2z5s_M] [2z5s_O] [2z5s_N] [2z5s_R] [2z5s_P] [2z5s_Q]
  • SWISS-PROT database: [Q7ZUW7] [P04637]
  • Belongs to the pore-forming pnc-27 peptide of 32 aas from the p53 tumor suppressor protein (pnc-27) family according to TCDB.
  • Domain organization of [MDM4_DANRE] [P53_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2Z5S with the sequences similar proteins can be viewed for 2Z5S's classification [MDM4_DANRE] [P53_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [MDM4_DANRE] [P53_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2Z5S
  • Community annotation for 2Z5S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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