2Z5T	Cell Cycle	date	Jul 17, 2007
title	Molecular Basis For The Inhibition Of P53 By Mdmx
authors	G.M.Popowicz, A.Czarna, U.Rothweiler, A.Szwagierczak, T.A.Holak
compound		source
Molecule: Mdm4 Protein Chain: M, N, O Fragment: Swib Domain Synonym: Zebrafish Mdmx With L46v And V95l Mutations Engineered: Yes Mutation: Yes		Organism_scientific: Danio Rerio Organism_common: Zebrafish Gene: Mdm4 Expression_system: Escherichia Coli Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-46
Molecule: Cellular Tumor Antigen P53 Chain: P, Q, R Fragment: Transactivation Domain Synonym: Tumor Suppressor P53, Phosphoprotein P53, Antigen Ny-Co-13; Engineered: Yes		Synthetic: Yes Other_details: Rp Hplc Purified
symmetry	Space Group: P 1 21 1	R_factor 0.211 R_Free 0.264
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.080 30.540 101.100 90.00 102.94 90.00
method	X-Ray Diffraction	resolution	2.30 Å
Primary reference	Molecular Basis for the Inhibition of p53 by Mdmx., Popowicz GM, Czarna A, Rothweiler U, Sszwagierczak A, Krajewski M, Weber L, Holak TA, Cell Cycle. 2007 Jul 12;6(19). PMID:17938582

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (2z5t.pdb1.gz) 20 Kb Biological Unit Coordinates (2z5t.pdb2.gz) 20 Kb Biological Unit Coordinates (2z5t.pdb3.gz) 21 Kb CSU: Contacts of Structural Units for 2Z5T Likely Quarternary Molecular Structure file(s) for 2Z5T Structure Factors (168 Kb) Retrieve 2Z5T in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Z5T from S2C, [Save to disk] Re-refined 2z5t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Z5T in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2Z5T

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2Z5T, from MSDmotif at EBI Fold representative 2z5t from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2z5t_M] [2z5t_N] [2z5t_O] [2z5t_P] [2z5t_Q] [2z5t_R] SWISS-PROT database: [Q7ZUW7] [P04637] Domain organization of [MDM4_DANRE] [P53_HUMAN] by SWISSPFAM Alignments of the sequence of 2Z5T with the sequences similar proteins can be viewed for 2Z5T's classification [MDM4_DANRE] [P53_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [MDM4_DANRE] [P53_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2Z5T

Community annotation for 2Z5T at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2010 Bioinformatics Unit Weizmann Institute of Science

---