2Z5V Immune System date Jul 19, 2007
title Solution Structure Of The Tir Domain Of Human Myd88
authors H.Ohnishi, H.Tochio, H.Hiroaki, N.Kondo, Z.Kato, M.Shirakawa
compound source
Molecule: Myeloid Differentiation Primary Response Protein Myd88;
Chain: A
Fragment: Myd88 Tir Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myd88
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-5x-3
methodSolution NMR

Primary referenceStructural basis for the multiple interactions of the MyD88 TIR domain in TLR4 signaling., Ohnishi H, Tochio H, Kato Z, Orii KE, Li A, Kimura T, Hiroaki H, Kondo N, Shirakawa M, Proc Natl Acad Sci U S A. 2009 Jun 23;106(25):10260-5. Epub 2009 Jun 8. PMID:19506249
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (783 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 2Z5V
  • Retrieve 2Z5V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z5V from S2C, [Save to disk]
  • View 2Z5V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z5V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Z5V, from MSDmotif at EBI
  • Fold representative 2z5v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z5v_A] [2z5v]
  • SWISS-PROT database: [Q99836]
  • Domain organization of [MYD88_HUMAN] by SWISSPFAM
  • Domain found in 2Z5V: [TIR ] by SMART
  • Other resources with information on 2Z5V
  • Community annotation for 2Z5V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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