2Z5X	Oxidoreductase	date	Jul 20, 2007
title	Crystal Structure Of Human Monoamine Oxidase A With Harmine
authors	S.Y.Son, J.Ma, M.Yoshimura, T.Tsukihara
compound		source
Molecule: Amine Oxidase [Flavin-Containing] A Chain: A Fragment: Residues 12-524 Synonym: Monoamine Oxidase Type A, Mao-A Ec: 1.4.3.4 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Saccharomyces Cerevisiae Expression_system_common: Baker'S Yeast Expression_system_taxid: 4932 Expression_system_strain: Bj2168 Expression_system_vector_type: Plasmid Expression_system_plasmid: Yep51
symmetry	Space Group: C 2 2 2	R_factor 0.201 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 135.263 218.706 54.373 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	DCX, FAD, GOL, HRM BindingDB	enzyme	Oxidoreductase E.C.1.4.3.4 BRENDA
subcellular loc.	Membrane localization by OPM: Mitochondrial outer membrane cytoplasmic side intermembrane space side
Gene Ontology	Chain Function Process Component A primary amine oxidase activi... oxidoreductase activity cellular biogenic amine meta... catecholamine metabolic proc... xenobiotic metabolic process... synaptic transmission neurotransmitter secretion behavior neurotransmitter catabolic p... neurotransmitter biosyntheti... dopamine catabolic process small molecule metabolic pro... oxidation-reduction process mitochondrion mitochondrial outer membrane... membrane integral to membrane
Primary reference	Structure of human monoamine oxidase A at 2.2-A resolution: the control of opening the entry for substrates/inhibitors., Son SY, Ma J, Kondou Y, Yoshimura M, Yamashita E, Tsukihara T, Proc Natl Acad Sci U S A. 2008 Apr 15;105(15):5739-44. Epub 2008 Apr 7. PMID:18391214

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk] Biological Unit Coordinates (2z5x.pdb1.gz) 90 Kb Biological Unit Coordinates (2z5x.pdb2.gz) 350 Kb LPC: Ligand-Protein Contacts for 2Z5X CSU: Contacts of Structural Units for 2Z5X Likely Quarternary Molecular Structure file(s) for 2Z5X Structure Factors (638 Kb) Retrieve 2Z5X in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Z5X from S2C, [Save to disk] Re-refined 2z5x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Z5X in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2Z5X

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2Z5X, from MSDmotif at EBI Fold representative 2z5x from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2z5x_A] SWISS-PROT database: [P21397] Domain organization of [AOFA_HUMAN] by SWISSPFAM Alignments of the sequence of 2Z5X with the sequences similar proteins can be viewed for 2Z5X's classification [AOFA_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [AOFA_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2Z5X

Community annotation for 2Z5X at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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