2Z5Y Oxidoreductase date Jul 20, 2007
title Crystal Structure Of Human Monoamine Oxidase A (G110a) With Harmine
authors S.Y.Son, J.Ma, M.Yoshimura, T.Tsukihara
compound source
Molecule: Amine Oxidase [Flavin-Containing] A
Chain: A
Fragment: Residues 12-524
Synonym: Monoamine Oxidase Type A, Mao-A
Ec: 1.4.3.4
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Bj2168
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Yep51
symmetry Space Group: C 2 2 2
R_factor 0.193 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.547 217.364 54.804 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.17 Å
ligand DCX, FAD, HRM BindingDB enzyme Oxidoreductase E.C.1.4.3.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of human monoamine oxidase A at 2.2-A resolution: the control of opening the entry for substrates/inhibitors., Son SY, Ma J, Kondou Y, Yoshimura M, Yamashita E, Tsukihara T, Proc Natl Acad Sci U S A. 2008 Apr 15;105(15):5739-44. Epub 2008 Apr 7. PMID:18391214
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (2z5y.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (2z5y.pdb2.gz) 349 Kb
  • LPC: Ligand-Protein Contacts for 2Z5Y
  • CSU: Contacts of Structural Units for 2Z5Y
  • Likely Quarternary Molecular Structure file(s) for 2Z5Y
  • Structure Factors (612 Kb)
  • Retrieve 2Z5Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z5Y from S2C, [Save to disk]
  • Re-refined 2z5y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z5Y
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Z5Y, from MSDmotif at EBI
  • Fold representative 2z5y from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z5y] [2z5y_A]
  • SWISS-PROT database: [P21397]
  • Domain organization of [AOFA_HUMAN] by SWISSPFAM
  • Other resources with information on 2Z5Y
  • Community annotation for 2Z5Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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