2Z63	Immune System	date	Jul 22, 2007
title	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfis
authors	H.M.Kim, B.S.Park, J.O.Lee
compound		source
Molecule: Toll-Like Receptor 4, Variable Lymphocyte Recepto Chain: A Fragment: Tlr4, Unp Residues 27-527(Human), Vlrb.61, Unp Re 133-199(Inshore Hagfish); Synonym: Htoll, Cd284 Antigen, Tv8 Engineered: Yes		Organism_scientific: Homo Sapiens, Eptatretus Burgeri Organism_common: Human, Inshore Hagfish Organism_taxid: 9606, 7764 Gene: Tlr4, Vlrb.61 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_strain: Hi-5 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pvl1393
symmetry	Space Group: P 31	R_factor 0.250 R_Free 0.298
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.136 88.136 92.205 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	FUL, NAG	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal Structure of the TLR4-MD-2 Complex with Bound Endotoxin Antagonist Eritoran., Kim HM, Park BS, Kim JI, Kim SE, Lee J, Oh SC, Enkhbayar P, Matsushima N, Lee H, Yoo OJ, Lee JO, Cell. 2007 Sep 7;130(5):906-17. PMID:17803912

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk] Biological Unit Coordinates (2z63.pdb1.gz) 96 Kb LPC: Ligand-Protein Contacts for 2Z63 CSU: Contacts of Structural Units for 2Z63 Likely Quarternary Molecular Structure file(s) for 2Z63 Structure Factors (1164 Kb) Retrieve 2Z63 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Z63 from S2C, [Save to disk] Re-refined 2z63 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Z63 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2Z63

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Z63, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2z63] [2z63_A] SWISS-PROT database: [O00206] Belongs to the neat-domain containing methaemoglobin heme sequestration (n-mhs) family according to TCDB. Domain organization of [TLR4_HUMAN] by SWISSPFAM Domains found in 2Z63: [LRR] [LRRCT] [LRR_TYP ] by SMART

Other resources with information on 2Z63

Community annotation for 2Z63 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---