2Z7J Viral Protein date Aug 23, 2007
title Structural Insights Into De Multifunctional Vp3 Protein Of Birnaviruses:Gold Derivative
authors A.Casanas, A.Navarro, C.Ferrer-Orta, D.Gonzalez, J.F.Rodriguez, N.Verdaguer
compound source
Molecule: Capsid Assembly Protein Vp3
Chain: A
Engineered: Yes
Organism_scientific: Infectious Bursal Disease Virus
Organism_common: Gumboro Virus
Organism_taxid: 10995
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 41 21 2
R_factor 0.236 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.749 69.749 71.656 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand AU enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into the multifunctional protein VP3 of birnaviruses., Casanas A, Navarro A, Ferrer-Orta C, Gonzalez D, Rodriguez JF, Verdaguer N, Structure. 2008 Jan;16(1):29-37. PMID:18184581
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (2z7j.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 2Z7J
  • CSU: Contacts of Structural Units for 2Z7J
  • Likely Quarternary Molecular Structure file(s) for 2Z7J
  • Structure Factors (52 Kb)
  • Retrieve 2Z7J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z7J from S2C, [Save to disk]
  • Re-refined 2z7j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z7J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z7J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z7J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z7j] [2z7j_A]
  • SWISS-PROT database: [P25220]
  • Domain organization of [POLS_IBDVP] by SWISSPFAM
  • Other resources with information on 2Z7J
  • Community annotation for 2Z7J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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