2Z7S Transferase date Aug 28, 2007
title Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk1 Bound To Purvalnol A
authors M.Ikuta, S.K.Munshi
compound source
Molecule: Ribosomal Protein S6 Kinase Alpha-1
Chain: A
Fragment: Residues 33-353
Synonym: S6k-Alpha 1, 90 Kda Ribosomal Protein S6 Kinase 1, P90-Rsk 1, Ribosomal S6 Kinase 1, Rsk-1, Pp90rsk1, P90s6k, Map Kinase-Activated Protein Kinase 1a, Mapkapk1a;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rps6ka1, Rsk1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf21
symmetry Space Group: P 21 21 21
R_factor 0.253 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.641 52.996 119.304 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand P01 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of the N-terminal kinase domain of human RSK1 bound to three different ligands: Implications for the design of RSK1 specific inhibitors., Ikuta M, Kornienko M, Byrne N, Reid JC, Mizuarai S, Kotani H, Munshi SK, Protein Sci. 2007 Dec;16(12):2626-35. Epub 2007 Oct 26. PMID:17965187
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2z7s.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2Z7S
  • CSU: Contacts of Structural Units for 2Z7S
  • Likely Quarternary Molecular Structure file(s) for 2Z7S
  • Retrieve 2Z7S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z7S from S2C, [Save to disk]
  • View 2Z7S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z7S
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2Z7S, from MSDmotif at EBI
  • Fold representative 2z7s from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z7s] [2z7s_A]
  • SWISS-PROT database: [Q15418]
  • Domain organization of [KS6A1_HUMAN] by SWISSPFAM
  • Domains found in 2Z7S: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 2Z7S
  • Community annotation for 2Z7S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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