2Z8Y Oxidoreductase Transferase date Sep 12, 2007
title Xenon-Bound Structure Of Bifunctional Carbon Monoxide Dehydrogenaseacetyl-Coa Synthase(Codhacs) From Moorella Thermoacetica
authors T.I.Doukov, L.C.Blasiak, C.L.Drennan
compound source
Molecule: Carbon Monoxide Dehydrogenaseacetyl Coa Synthase Beta;
Chain: A, B, C, D
Synonym: Carbon Monoxide Dehydrogenase Subunit, Codhacs, C Subunit;
Ec: 1.2.7.4, 1.2.99.2
Organism_scientific: Moorella Thermoacetica
Organism_taxid: 1525

Molecule: Carbon Monoxide Dehydrogenaseacetyl Coa Synthase Alpha;
Chain: M, N, O, P
Synonym: Acetyl Coa Synthase Subunit, Codhacs, Acs Subunit
Ec: 2.3.1.169

Organism_scientific: Moorella Thermoacetica
Organism_taxid: 1525
symmetry Space Group: P 1
R_factor 0.178 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.540 136.600 141.750 101.29 109.22 103.91
method X-Ray Diffractionresolution 2.51 Å
ligand CU1, GOL, NI, SF4, XCC, XE enzyme Oxidoreductase E.C.1.2.7.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


O, M, N, P


Primary referenceXenon in and at the End of the Tunnel of Bifunctional Carbon Monoxide Dehydrogenase/Acetyl-CoA Synthase(,)., Doukov TI, Blasiak LC, Seravalli J, Ragsdale SW, Drennan CL, Biochemistry. 2008 Mar 18;47(11):3474-83. Epub 2008 Feb 23. PMID:18293927
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (888 Kb) [Save to disk]
  • Biological Unit Coordinates (2z8y.pdb1.gz) 448 Kb
  • Biological Unit Coordinates (2z8y.pdb2.gz) 440 Kb
  • LPC: Ligand-Protein Contacts for 2Z8Y
  • CSU: Contacts of Structural Units for 2Z8Y
  • Likely Quarternary Molecular Structure file(s) for 2Z8Y
  • Structure Factors (1760 Kb)
  • Retrieve 2Z8Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Z8Y from S2C, [Save to disk]
  • Re-refined 2z8y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Z8Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Z8Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Z8Y, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2z8y_C] [2z8y_M] [2z8y_D] [2z8y_B] [2z8y_O] [2z8y] [2z8y_N] [2z8y_P] [2z8y_A]
  • SWISS-PROT database: [P27988] [P27989]
  • Domain organization of [DCMA_MOOTH] [DCMB_MOOTH] by SWISSPFAM
  • Other resources with information on 2Z8Y
  • Community annotation for 2Z8Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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