2ZB1	Transferase	date	Oct 13, 2007
title	Crystal Structure Of P38 In Complex With Biphenyl Amide Inhi
authors	D.O.Somers
compound		source
Molecule: Mitogen-Activated Protein Kinase 14 Chain: A Synonym: Mitogen-Activated Protein Kinase P38 Alpha, Map Ki Alpha, Cytokine Suppressive Anti-Inflammatory Drug-Binding Csaid-Binding Protein, Csbp, Max-Interacting Protein 2, Map Mxi2, Sapk2a; Ec: 2.7.11.24 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Brl Expression_system_vector_type: Plasmid Expression_system_plasmid: Prseta
symmetry	Space Group: P 21 21 21	R_factor 0.169 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 45.570 86.106 124.362 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	GK4, GOL BindingDB	enzyme	Transferase E.C.2.7.11.24 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Biphenyl amide p38 kinase inhibitors 1: Discovery and binding mode., Angell RM, Bamborough P, Cleasby A, Cockerill SG, Jones KL, Mooney CJ, Somers DO, Walker AL, Bioorg Med Chem Lett. 2008 Jan 1;18(1):318-23. Epub 2007 Nov 19. PMID:18006306

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk] Biological Unit Coordinates (2zb1.pdb1.gz) 61 Kb LPC: Ligand-Protein Contacts for 2ZB1 CSU: Contacts of Structural Units for 2ZB1 Likely Quarternary Molecular Structure file(s) for 2ZB1 Structure Factors (116 Kb) Retrieve 2ZB1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZB1 from S2C, [Save to disk] Re-refined 2zb1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZB1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZB1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZB1, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1e2zb1, region B:1-168,B:233-251 [Jmol] [rasmolscript] [script source]     - Domain d1w2zb1, region B:207-647 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zb1_A] [2zb1] SWISS-PROT database: [Q16539] Domain organization of [MK14_HUMAN] by SWISSPFAM Domain found in 2ZB1: [S_TKc ] by SMART

Other resources with information on 2ZB1

Community annotation for 2ZB1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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