2ZB2 Transferase date Oct 15, 2007
title Human Liver Glycogen Phosphorylase A Complexed With Glcose A Chloro-N-[4-(1,2-Dihydroxyethyl)Phenyl]-1h-Indole-2-Carboxa
authors N.Katayama, K.Onda
compound source
Molecule: Glycogen Phosphorylase, Liver Form
Chain: A, B
Ec: 2.4.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Liver
Gene: Pygl
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet42b
symmetry Space Group: P 31
R_factor 0.261 R_Free 0.307
crystal
cell
length a length b length c angle alpha angle beta angle gamma
123.819 123.819 123.538 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.45 Å
ligand A46, GLC, MES, MPD, PLP BindingDB enzyme Transferase E.C.2.4.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSynthesis of 5-chloro-N-aryl-1H-indole-2-carboxamide derivatives as inhibitors of human liver glycogen phosphorylase a., Onda K, Suzuki T, Shiraki R, Yonetoku Y, Negoro K, Momose K, Katayama N, Orita M, Yamaguchi T, Ohta M, Tsukamoto S, Bioorg Med Chem. 2008 May 15;16(10):5452-64. Epub 2008 Apr 11. PMID:18434170
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk]
  • Biological Unit Coordinates (2zb2.pdb1.gz) 268 Kb
  • LPC: Ligand-Protein Contacts for 2ZB2
  • CSU: Contacts of Structural Units for 2ZB2
  • Likely Quarternary Molecular Structure file(s) for 2ZB2
  • Retrieve 2ZB2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZB2 from S2C, [Save to disk]
  • View 2ZB2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZB2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ZB2, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e2zb2, region B:169-232 [Jmol] [rasmolscript] [script source]
        - Domain d1w2zb2, region B:6-98 [Jmol] [rasmolscript] [script source]
  • Fold representative 2zb2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zb2] [2zb2_A] [2zb2_B]
  • SWISS-PROT database: [P06737]
  • Domain organization of [PYGL_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 2ZB2 with the sequences similar proteins can be viewed for 2ZB2's classification [PYGL_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PYGL_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2ZB2
  • Community annotation for 2ZB2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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