2ZBJ Sugar Binding Protein date Oct 22, 2007
title Crystal Structure Of Dioclea Rostrata Lectin
authors T.M.De Oliveira, P.Delatorre, B.A.M.Da Rocha, E.P.De Sousa, K.S.Nascimento, G.A.Bezerra, T.R.Moura, R.G.Benevides, E.H.S.Be F.B.M.B.Moreno, V.N.Freire, W.F.De Azevedo Jr., B.S.Cavada
compound source
Molecule: Lectin Alpha Chain
Chain: A
 Organism_scientific: Dioclea Rostrata
Organism_taxid: 192416
Tissue: Seed
Other_details: Seed Lectin
symmetry Space Group: I 2 2 2
R_factor 0.187 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.511 88.220 87.764 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand CA, MN, PO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of Dioclea rostrata lectin: Insights into understanding the pH-dependent dimer-tetramer equilibrium and the structural basis for carbohydrate recognition in Diocleinae lectins., de Oliveira TM, Delatorre P, da Rocha BA, de Souza EP, Nascimento KS, Bezerra GA, Moura TR, Benevides RG, Bezerra EH, Moreno FB, Freire VN, de Azevedo WF Jr, Cavada BS, J Struct Biol. 2008 Jul 22. PMID:18682294
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (2zbj.pdb1.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 2ZBJ
  • CSU: Contacts of Structural Units for 2ZBJ
  • Likely Quarternary Molecular Structure file(s) for 2ZBJ
  • Structure Factors (124 Kb)
  • Retrieve 2ZBJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZBJ from S2C, [Save to disk]
  • Re-refined 2zbj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2ZBJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ZBJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZBJ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zbj_A] [2zbj]
  • SWISS-PROT database: [P58908]
  • Domain organization of [LECA_DIORO] by SWISSPFAM
    • Other resources with information on 2ZBJ
  • Community annotation for 2ZBJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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