2ZCO Transferase date Nov 11, 2007
title Crystal Structure Of The C(30) Carotenoid Dehydrosqualene Sy From Staphylococcus Aureus
authors C.I.Liu, W.Y.Jeng, A.H.Wang, E.Oldfield
compound source
Molecule: Dehydrosqualene Synthase
Chain: A
Synonym: Diapophytoene Synthase, 4,4'-Diapophytoene Synthas Synthase;
Ec: 2.5.1.-
Engineered: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Strain: Atcc 27659
Gene: Crtm
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl-21 (De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-32 Xalic
symmetry Space Group: P 32 2 1
R_factor 0.187 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.410 80.410 90.200 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.58 Å
ligand
enzyme Transferase E.C.2.5.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA cholesterol biosynthesis inhibitor blocks Staphylococcus aureus virulence., Liu CI, Liu GY, Song Y, Yin F, Hensler ME, Jeng WY, Nizet V, Wang AH, Oldfield E, Science. 2008 Mar 7;319(5868):1391-4. Epub 2008 Feb 14. PMID:18276850
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (2zco.pdb1.gz) 60 Kb
  • CSU: Contacts of Structural Units for 2ZCO
  • Likely Quarternary Molecular Structure file(s) for 2ZCO
  • Structure Factors (1439 Kb)
  • Retrieve 2ZCO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZCO from S2C, [Save to disk]
  • Re-refined 2zco structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZCO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZCO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZCO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zco_A] [2zco]
  • SWISS-PROT database: [A9JQL9]
  • Domain organization of [CRTM_STAAU] by SWISSPFAM
  • Other resources with information on 2ZCO
  • Community annotation for 2ZCO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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