2ZDT	Transferase	date	Nov 27, 2007
title	Crystal Structure Of Human Jnk3 Complexed With An Isoquinolo Inhibitor
authors	S.Sogabe, Y.Asano, S.Fukumoto, N.Habuka, A.Fujishima
compound		source
Molecule: Mitogen-Activated Protein Kinase 10 Chain: A Fragment: Residues Unp 39-402 Synonym: Stress-Activated Protein Kinase Jnk3, C-Jun N-Term Kinase 3, Map Kinase P49 3f12; Ec: 2.7.11.24 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21alpha
symmetry	Space Group: P 21 21 21	R_factor 0.216 R_Free 0.262
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.331 71.687 108.103 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	46C, GOL BindingDB	enzyme	Transferase E.C.2.7.11.24 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Discovery, synthesis and biological evaluation of isoquinolones as novel and highly selective JNK inhibitors (2)., Asano Y, Kitamura S, Ohra T, Itoh F, Kajino M, Tamura T, Kaneko M, Ikeda S, Igata H, Kawamoto T, Sogabe S, Matsumoto S, Tanaka T, Yamaguchi M, Kimura H, Fukumoto S, Bioorg Med Chem. 2008 Apr 15;16(8):4699-714. Epub 2008 Feb 13. PMID:18313930

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk] Biological Unit Coordinates (2zdt.pdb1.gz) 60 Kb LPC: Ligand-Protein Contacts for 2ZDT CSU: Contacts of Structural Units for 2ZDT Likely Quarternary Molecular Structure file(s) for 2ZDT Structure Factors (216 Kb) Retrieve 2ZDT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZDT from S2C, [Save to disk] Re-refined 2zdt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZDT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZDT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZDT, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zdt] [2zdt_A] SWISS-PROT database: [P53779] Domain organization of [MK10_HUMAN] by SWISSPFAM Domain found in 2ZDT: [S_TKc ] by SMART

Other resources with information on 2ZDT

Community annotation for 2ZDT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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