2ZE1	Hydrolase	date	Dec 05, 2007
title	X-Ray Structure Of Bace-1 In Complex With Compound 6g
authors	R.Chopra, A.Olland
compound		source
Molecule: Beta-Secretase 1 Chain: A Fragment: Unp Residues 46-454 Synonym: Beta-Site App Cleaving Enzyme 1, Beta-Site Amyloid Precursor Protein Cleaving Enzyme 1, Membrane- Associated Aspartic Protease 2, Memapsin-2, Aspartyl Protease 2, Asp 2, Asp2; Ec: 3.4.23.46 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bace1, Bace Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 1 2 1	R_factor 0.248 R_Free 0.290
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.026 104.321 50.465 90.00 94.57 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	411 BindingDB	enzyme	Hydrolase E.C.3.4.23.46 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Acylguanidine inhibitors of beta-secretase: optimization of the pyrrole ring substituents extending into the S1 and S3 substrate binding pockets., Cole DC, Stock JR, Chopra R, Cowling R, Ellingboe JW, Fan KY, Harrison BL, Hu Y, Jacobsen S, Jennings LD, Jin G, Lohse PA, Malamas MS, Manas ES, Moore WJ, O'Donnell MM, Olland AM, Robichaud AJ, Svenson K, Wu J, Wagner E, Bard J, Bioorg Med Chem Lett. 2008 Feb 1;18(3):1063-6. Epub 2007 Dec 10. PMID:18162398

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk] Biological Unit Coordinates (2ze1.pdb1.gz) 60 Kb LPC: Ligand-Protein Contacts for 2ZE1 CSU: Contacts of Structural Units for 2ZE1 Likely Quarternary Molecular Structure file(s) for 2ZE1 Retrieve 2ZE1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZE1 from S2C, [Save to disk]

View 2ZE1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZE1

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZE1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2ze1_A] [2ze1] SWISS-PROT database: [P56817] Belongs to the β-amyloid cleaving enzyme (bace1) family according to TCDB. Domain organization of [BACE1_HUMAN] by SWISSPFAM

Other resources with information on 2ZE1

Community annotation for 2ZE1 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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