2ZFU Nuclear Protein date Jan 14, 2008
title Structure Of The Methyltransferase-Like Domain Of Nucleometh
authors H.Minami, H.Hashimoto, A.Murayama, J.Yanagisawa, M.Sato, T.Shimiz
compound source
Molecule: Cerebral Protein 1
Chain: A, B
Fragment: Methyltransferase-Like Domain, Unp Residues 242-4
Synonym: Nucleomethylin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kiaa0409
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-2
symmetry Space Group: P 61
R_factor 0.192 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.810 43.810 403.910 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand SAH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEpigenetic control of rDNA loci in response to intracellular energy status., Murayama A, Ohmori K, Fujimura A, Minami H, Yasuzawa-Tanaka K, Kuroda T, Oie S, Daitoku H, Okuwaki M, Nagata K, Fukamizu A, Kimura K, Shimizu T, Yanagisawa J, Cell. 2008 May 16;133(4):627-39. PMID:18485871
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (2zfu.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (2zfu.pdb2.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 2ZFU
  • CSU: Contacts of Structural Units for 2ZFU
  • Likely Quarternary Molecular Structure file(s) for 2ZFU
  • Structure Factors (424 Kb)
  • Retrieve 2ZFU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZFU from S2C, [Save to disk]
  • Re-refined 2zfu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZFU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZFU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZFU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zfu] [2zfu_A] [2zfu_] [2zfu_B]
  • SWISS-PROT database: [O43159]
  • Domain organization of [RRP8_HUMAN] by SWISSPFAM
  • Other resources with information on 2ZFU
  • Community annotation for 2ZFU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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