2ZGV	Transferase	date	Jan 26, 2008
title	Crystal Structure Of Human Phosphoglycerate Kinase Bound To
authors	S.T.Arold, C.Gondeau, C.Lionne, L.Chaloin
compound		source
Molecule: Phosphoglycerate Kinase 1 Chain: A Synonym: 3-Phosphoglycerate Kinase, Primer Recognition Prot 2, Cell Migration-Inducing Gene 10 Protein; Ec: 2.7.2.3 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Gene: Pgk1 Expression_system: Escherichia Coli Expression_system_strain: Bl21 (De3)Pdia17 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 1 21 1	R_factor 0.176 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 35.956 106.627 50.350 90.00 97.30 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ADP	enzyme	Transferase E.C.2.7.2.3 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Molecular basis for the lack of enantioselectivity of human 3-phosphoglycerate kinase., Gondeau C, Chaloin L, Lallemand P, Roy B, Perigaud C, Barman T, Varga A, Vas M, Lionne C, Arold ST, Nucleic Acids Res. 2008 Jun;36(11):3620-9. Epub 2008 May 7. PMID:18463139

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk] Biological Unit Coordinates (2zgv.pdb1.gz) 65 Kb LPC: Ligand-Protein Contacts for 2ZGV CSU: Contacts of Structural Units for 2ZGV Likely Quarternary Molecular Structure file(s) for 2ZGV Structure Factors (166 Kb) Retrieve 2ZGV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZGV from S2C, [Save to disk] Re-refined 2zgv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZGV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZGV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZGV, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zgv_A] [2zgv] SWISS-PROT database: [P00558] Domain organization of [PGK1_HUMAN] by SWISSPFAM

Other resources with information on 2ZGV

Community annotation for 2ZGV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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