2ZIU Hydrolase date Feb 25, 2008
title Crystal Structure Of The Mus81-Eme1 Complex
authors J.H.Chang, J.J.Kim, J.M.Choi, J.H.Lee, Y.Cho
compound source
Molecule: Mus81 Protein
Chain: A
Fragment: Nuclease Domain And C-Terminal Domain, Unp Residu 612;
Synonym: Dna Structure Specific Endonuclease Mus81
Engineered: Yes
Organism_scientific: Danio Rerio
Organism_common: Zebrafish
Organism_taxid: 7955
Gene: Mus81
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdf Duet

Molecule: Crossover Junction Endonuclease Eme1
Chain: B
Fragment: Nuclease-Like Domain And C-Terminal Domain, Unp R 246-570;
Synonym: Hmms4, Dna Repair Protein Eme1
Ec: 3.1.22.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eme1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet Duet
symmetry Space Group: P 31 2 1
R_factor 0.234 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.681 88.681 170.216 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand
enzyme Hydrolase E.C.3.1.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCrystal structure of the Mus81-Eme1 complex., Chang JH, Kim JJ, Choi JM, Lee JH, Cho Y, Genes Dev. 2008 Apr 15;22(8):1093-106. PMID:18413719
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (2ziu.pdb1.gz) 86 Kb
  • CSU: Contacts of Structural Units for 2ZIU
  • Likely Quarternary Molecular Structure file(s) for 2ZIU
  • Structure Factors (172 Kb)
  • Retrieve 2ZIU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZIU from S2C, [Save to disk]
  • Re-refined 2ziu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZIU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZIU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZIU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ziu] [2ziu_B] [2ziu_A]
  • SWISS-PROT database: [Q96AY2] [Q7SXA9]
  • Domain organization of [EME1_HUMAN] [MUS81_DANRE] by SWISSPFAM
  • Domains found in 2ZIU: [ERCC4] [HhH1 ] by SMART
  • Other resources with information on 2ZIU
  • Community annotation for 2ZIU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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