2ZKJ	Transferase	date	Mar 25, 2008
title	Crystal Structure Of Human Pdk4-Adp Complex
authors	M.Kato, R.M.Wynn, J.L.Chuang, S.C.Tso, J.Li, D.T.Chuang
compound		source
Molecule: [Pyruvate Dehydrogenase [Lipoamide]] Kinase Isozy Chain: A, B Fragment: Unp Residues 20-411 Synonym: Pyruvate Dehydrogenase Kinase Isoform 4 Ec: 2.7.11.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pdk4 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid
symmetry	Space Group: P 1 21 1	R_factor 0.185 R_Free 0.240
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.616 68.743 81.554 90.00 100.10 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ADP, MG, PO4	enzyme	Transferase E.C.2.7.11.2 BRENDA
Gene Ontology	Chain Function Process Component A, B protein kinase activity protein serine/threonine kin... pyruvate dehydrogenase (acet...
Primary reference	Pyruvate dehydrogenase kinase-4 structures reveal a metastable open conformation fostering robust core-free basal activity., Wynn RM, Kato M, Chuang JL, Tso SC, Li J, Chuang DT, J Biol Chem. 2008 Sep 12;283(37):25305-15. Epub 2008 Jul 24. PMID:18658136

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk] Biological Unit Coordinates (2zkj.pdb1.gz) 118 Kb Biological Unit Coordinates (2zkj.pdb2.gz) 118 Kb LPC: Ligand-Protein Contacts for 2ZKJ CSU: Contacts of Structural Units for 2ZKJ Likely Quarternary Molecular Structure file(s) for 2ZKJ Structure Factors (383 Kb) Retrieve 2ZKJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZKJ from S2C, [Save to disk] Re-refined 2zkj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZKJ in 3D

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Visual 3D analysis of 2ZKJ

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZKJ, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zkj_A] [2zkj] [2zkj_B] SWISS-PROT database: [Q16654] Domain organization of [PDK4_HUMAN] by SWISSPFAM Domain found in 2ZKJ: [HATPase_c ] by SMART

Other resources with information on 2ZKJ

Community annotation for 2ZKJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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