2ZME	Protein Transport	date	Apr 17, 2008
title	Integrated Structural And Functional Model Of The Human Escr Complex
authors	Y.J.Im, J.H.Hurley
compound		source
Molecule: Vacuolar-Sorting Protein Snf8 Chain: A Synonym: Ell-Associated Protein Of 30 Kda Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Snf8, Eap30 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pst39
Molecule: Vacuolar Protein-Sorting-Associated Protein 36 Chain: B Fragment: Unp Residues 149-386 Synonym: Ell-Associated Protein Of 45 Kda Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vps36, C13orf9, Eap45 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pst39
Molecule: Vacuolar Protein-Sorting-Associated Protein 25 Chain: C, D Fragment: Unp Residues 1-102 Synonym: Hvps25, Ell-Associated Protein Of 20 Kda, Dermal P Derived Protein 9; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Vps25, Derp9, Eap20 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Star Expression_system_vector_type: Plasmid Expression_system_plasmid: Pst39
symmetry	Space Group: P 32 1 2	R_factor 0.214 R_Free 0.313
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.480 81.480 226.244 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.90 Å
Gene Ontology	Chain Function Process Component A B D, C
Primary reference	Integrated structural model and membrane targeting mechanism of the human ESCRT-II complex., Im YJ, Hurley JH, Dev Cell. 2008 Jun;14(6):902-13. PMID:18539118

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk] Biological Unit Coordinates (2zme.pdb1.gz) 101 Kb CSU: Contacts of Structural Units for 2ZME Likely Quarternary Molecular Structure file(s) for 2ZME Structure Factors (151 Kb) Retrieve 2ZME in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZME from S2C, [Save to disk] Re-refined 2zme structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZME in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZME

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZME, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zme_A] [2zme_B] [2zme_D] [2zme] [2zme_C] SWISS-PROT database: [Q96H20] [Q9BRG1] [Q86VN1] Domain organization of [SNF8_HUMAN] [VPS25_HUMAN] [VPS36_HUMAN] by SWISSPFAM

Other resources with information on 2ZME

Community annotation for 2ZME at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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