2ZO0	Ligase Dna	date	May 05, 2008
title	Mouse Np95 Sra Domain Dna Specific Complex 1
authors	H.Hashimoto, J.R.Horton, X.Cheng
compound		source
Molecule: E3 Ubiquitin-Protein Ligase Uhrf1 Chain: B Fragment: Sra Domain, Residues 419-628 Synonym: Ubiquitin-Like Phd And Ring Finger Domain- Containing Protein 1, Ubiquitin-Like-Containing Phd And Ring Finger Domains Protein 1, Nuclear Zinc Finger Protein Np95, Nuclear Protein 95; Ec: 6.3.2.- Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Np95 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)-Gold Cells Expression_system_vector_type: Plasmid Expression_system_plasmid: Pxc666
Molecule: Dna (5'- D(Dtpdcpdcpdapdtpdgpdcpdgpdcpdtpdgpdapdc)-3'); Chain: D Engineered: Yes Other_details: 12 Base Pair Dna Duplex		Synthetic: Yes
Molecule: Dna (5'-D(Dgpdtpdcpdapdgp(5cm) Pdgpdcpdapdapdtpdgpdg)-3'); Chain: E Engineered: Yes Other_details: 12 Base Pair Dna Duplex		Synthetic: Yes
symmetry	Space Group: P 21 21 21	R_factor 0.217 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.982 69.008 92.956 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.19 Å
ligand	5CM	enzyme	Ligase E.C.6.3.2 BRENDA
Primary reference	The SRA domain of UHRF1 flips 5-methylcytosine out of the DNA helix., Hashimoto H, Horton JR, Zhang X, Bostick M, Jacobsen SE, Cheng X, Nature. 2008 Oct 9;455(7214):826-9. Epub 2008 Sep 3. PMID:18772888

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (2zo0.pdb1.gz) 46 Kb Biological Unit Coordinates (2zo0.pdb2.gz) 35 Kb Biological Unit Coordinates (2zo0.pdb3.gz) 12 Kb LPC: Ligand-Protein Contacts for 2ZO0 CSU: Contacts of Structural Units for 2ZO0 Likely Quarternary Molecular Structure file(s) for 2ZO0 Structure Factors (288 Kb) Retrieve 2ZO0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZO0 from S2C, [Save to disk] Re-refined 2zo0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZO0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZO0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2ZO0, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zo0_B] [2zo0_E] [2zo0] [2zo0_D] SWISS-PROT database: [Q8VDF2] Domain organization of [UHRF1_MOUSE] by SWISSPFAM Domain found in 2ZO0: [SRA ] by SMART

Other resources with information on 2ZO0

Community annotation for 2ZO0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---