2ZOU Cell Adhesion date Jun 07, 2008
title Crystal Structure Of Human F-Spondin Reeler Domain (Fragment
authors M.Nagae, T.Nogi, J.Takagi
compound source
Molecule: Spondin-1
Chain: A, B
Fragment: Reeler Domain
Synonym: F-Spondin, Vascular Smooth Muscle Cell Growth-Prom Factor;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Spon1, Kiaa0762, Vsgp
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293s Cell
Expression_system_vector_type: Plasmid
symmetry Space Group: C 1 2 1
R_factor 0.202 R_Free 0.222
length a length b length c angle alpha angle beta angle gamma
93.253 50.518 63.171 90.00 100.37 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand EDO enzyme
note 2ZOU is a representative structure
Primary referenceStructure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop., Nagae M, Nishikawa K, Yasui N, Yamasaki M, Nogi T, Takagi J, Acta Crystallogr D Biol Crystallogr. 2008 Nov;64(Pt 11):1138-45. Epub 2008, Oct 18. PMID:19020352
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (2zou.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (2zou.pdb2.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 2ZOU
  • CSU: Contacts of Structural Units for 2ZOU
  • Likely Quarternary Molecular Structure file(s) for 2ZOU
  • Structure Factors (739 Kb)
  • Retrieve 2ZOU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZOU from S2C, [Save to disk]
  • Re-refined 2zou structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZOU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZOU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ZOU, from MSDmotif at EBI
  • Fold representative 2zou from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zou_B] [2zou_A] [2zou]
  • SWISS-PROT database: [Q9HCB6]
  • Domain organization of [SPON1_HUMAN] by SWISSPFAM
  • Other resources with information on 2ZOU
  • Community annotation for 2ZOU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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