2ZP0	Hydrolase Blood Clotting	date	Jun 20, 2008
title	Human Factor Viia-Tissue Factor Complexed With Benzylsulfona Ile-Gln-P-Aminobenzamidine
authors	S.Kadono, A.Sakamoto, Y.Kikuchi, M.Oh-Eda, N.Yabuta, T.Koga, K.Hat T.Shiraishi, M.Haramura, H.Kodama
compound		source
Molecule: Factor Vii Light Chain Chain: L Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa; Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_cell: Cho
Molecule: Factor Vii Heavy Chain Chain: H Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa; Ec: 3.4.21.21 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F7 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_cell: Cho
Molecule: Tissue Factor Chain: T Fragment: Residues 16-257 Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: F3 Expression_system: Escherichia Coli Expression_system_strain: Jm-109 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pkk223-3
symmetry	Space Group: P 21 21 21	R_factor 0.218 R_Free 0.306
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.370 81.990 123.310 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	BGC, CA, CGU, FUC, PI0	enzyme	Hydrolase E.C.3.4.21.21 BRENDA

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk] Biological Unit Coordinates (2zp0.pdb1.gz) 104 Kb LPC: Ligand-Protein Contacts for 2ZP0 CSU: Contacts of Structural Units for 2ZP0 Likely Quarternary Molecular Structure file(s) for 2ZP0 Structure Factors (209 Kb) Retrieve 2ZP0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2ZP0 from S2C, [Save to disk] Re-refined 2zp0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZP0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz. On AstexViewer, from MSD-EBI (viewer documentation). On RasMol (Install RasMol freeware) Here's help on how to use RasMol.

Visual 3D analysis of 2ZP0

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 2ZP0, from MSDmotif at EBI Fold representative 2zp0 from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zp0_H] [2zp0_L] [2zp0_T] SWISS-PROT database: [P08709] [P13726] Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM Domains found in 2ZP0: [EGF_CA] [EGF_like] [GLA] [Tryp_SPc ] by SMART Alignments of the sequence of 2ZP0 with the sequences similar proteins can be viewed for 2ZP0's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list. A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on the Cluster number.

Other resources with information on 2ZP0

Community annotation for 2ZP0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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