2ZP0 Hydrolase Blood Clotting date Jun 20, 2008
title Human Factor Viia-Tissue Factor Complexed With Benzylsulfona Ile-Gln-P-Aminobenzamidine
authors S.Kadono, A.Sakamoto, Y.Kikuchi, M.Oh-Eda, N.Yabuta, T.Koga, K.Hat T.Shiraishi, M.Haramura, H.Kodama
compound source
Molecule: Factor Vii Light Chain
Chain: L
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa;
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F7
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_cell: Cho

Molecule: Factor Vii Heavy Chain
Chain: H
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin, Eptacog Alfa;
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F7
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_cell: Cho

Molecule: Tissue Factor
Chain: T
Fragment: Residues 16-257
Synonym: Tf, Coagulation Factor III, Thromboplastin, Cd142
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F3
Expression_system: Escherichia Coli
Expression_system_strain: Jm-109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk223-3
symmetry Space Group: P 21 21 21
R_factor 0.218 R_Free 0.306
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.370 81.990 123.310 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand BGC, CA, CGU, FUC, PI0 enzyme Hydrolase E.C.3.4.21.21 BRENDA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (111 Kb) [Save to disk]
  • Biological Unit Coordinates (2zp0.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 2ZP0
  • CSU: Contacts of Structural Units for 2ZP0
  • Likely Quarternary Molecular Structure file(s) for 2ZP0
  • Structure Factors (201 Kb)
  • Retrieve 2ZP0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZP0 from S2C, [Save to disk]
  • Re-refined 2zp0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZP0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZP0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ZP0, from MSDmotif at EBI
  • Fold representative 2zp0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zp0_L] [2zp0_T] [2zp0_H] [2zp0]
  • SWISS-PROT database: [P08709] [P13726]
  • Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM
  • Domains found in 2ZP0: [EGF] [EGF_CA] [GLA] [Tryp_SPc ] by SMART
  • Alignments of the sequence of 2ZP0 with the sequences similar proteins can be viewed for 2ZP0's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2ZP0
  • Community annotation for 2ZP0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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