2ZPB Lyase date Jul 09, 2008
title Nitrosylated Fe-Type Nitrile Hydratase
authors K.Hashimoto, H.Suzuki, K.Taniguchi, T.Noguchi, M.Yohda, M.Odaka
compound source
Molecule: Nitrile Hydratase Subunit Alpha
Chain: A
Synonym: Nitrilase, Nhase
Ec: 4.2.1.84
Organism_scientific: Rhodococcus Erythropolis
Organism_taxid: 1833
Strain: N771

Molecule: Nitrile Hydratase Subunit Beta
Chain: B
Synonym: Nitrilase, Nhase
Ec: 4.2.1.84

Organism_scientific: Rhodococcus Erythropolis
Organism_taxid: 1833
Strain: N771
symmetry Space Group: C 1 2 1
R_factor 0.167 R_Free 0.186
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.657 60.548 81.920 90.00 124.97 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand CSD, CSO, FE, MG, NO enzyme Lyase E.C.4.2.1.84 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCatalytic mechanism of nitrile hydratase proposed by time-resolved X-ray crystallography using a novel substrate, tert-butylisonitrile., Hashimoto K, Suzuki H, Taniguchi K, Noguchi T, Yohda M, Odaka M, J Biol Chem. 2008 Oct 23. PMID:18948265
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (2zpb.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (2zpb.pdb2.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 2ZPB
  • CSU: Contacts of Structural Units for 2ZPB
  • Likely Quarternary Molecular Structure file(s) for 2ZPB
  • Structure Factors (848 Kb)
  • Retrieve 2ZPB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZPB from S2C, [Save to disk]
  • Re-refined 2zpb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZPB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZPB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ZPB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zpb_A] [2zpb] [2zpb_B]
  • SWISS-PROT database: [P13448] [P13449]
  • Domain organization of [NHAA_RHOER] [NHAB_RHOER] by SWISSPFAM
  • Other resources with information on 2ZPB
  • Community annotation for 2ZPB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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