2ZQR Lyase date Aug 16, 2008
title Crystal Structure Of Auh Without Rna
authors K.Kurimoto, K.Kuwasako, Y.Muto, O.Nureki, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Methylglutaconyl-Coa Hydratase
Chain: A, B, C, D, E, F
Synonym: Auh, Au-Specific Rna-Binding Enoyl-Coa Hydratase, Au-Binding Proteinenoyl-Coa Hydratase;
Ec: 4.2.1.18
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Auh
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p1
symmetry Space Group: P 1 21 1
R_factor 0.197 R_Free 0.263
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.208 132.429 80.043 90.00 108.10 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand
enzyme Lyase E.C.4.2.1.18 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceAU-rich RNA-binding induces changes in the quaternary structure of AUH., Kurimoto K, Kuwasako K, Sandercock AM, Unzai S, Robinson CV, Muto Y, Yokoyama S, Proteins. 2009 May 1;75(2):360-72. PMID:18831052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (251 Kb) [Save to disk]
  • Biological Unit Coordinates (2zqr.pdb1.gz) 247 Kb
  • CSU: Contacts of Structural Units for 2ZQR
  • Likely Quarternary Molecular Structure file(s) for 2ZQR
  • Structure Factors (486 Kb)
  • Retrieve 2ZQR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZQR from S2C, [Save to disk]
  • Re-refined 2zqr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZQR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZQR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ZQR, from MSDmotif at EBI
  • Fold representative 2zqr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zqr_F] [2zqr_E] [2zqr_B] [2zqr_A] [2zqr_D] [2zqr_C] [2zqr]
  • SWISS-PROT database: [Q13825]
  • Domain organization of [AUHM_HUMAN] by SWISSPFAM
  • Other resources with information on 2ZQR
  • Community annotation for 2ZQR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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