2ZT5 Ligase date Sep 19, 2008
title Crystal Structure Of Human Glycyl-Trna Synthetase (Glyrs) In Complex With Ap4a (Cocrystallized With Atp)
authors R.T.Guo, X.L.Yang, P.Schimmel
compound source
Molecule: Glycyl-Trna Synthetase
Chain: A
Fragment: Unp Residues 55-739
Synonym: Glycine-Trna Ligase, Glyrs
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gars
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a
symmetry Space Group: C 2 2 21
R_factor 0.233 R_Free 0.258
length a length b length c angle alpha angle beta angle gamma
115.861 139.840 132.943 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand B4P enzyme Ligase E.C. BRENDA

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (2zt5.pdb1.gz) 188 Kb
  • LPC: Ligand-Protein Contacts for 2ZT5
  • CSU: Contacts of Structural Units for 2ZT5
  • Structure Factors (353 Kb)
  • Retrieve 2ZT5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZT5 from S2C, [Save to disk]
  • Re-refined 2zt5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZT5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZT5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ZT5, from MSDmotif at EBI
  • Fold representative 2zt5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zt5] [2zt5_A]
  • SWISS-PROT database: [P41250]
  • Domain organization of [SYG_HUMAN] by SWISSPFAM
  • Domain found in 2ZT5: [WHEP-TRS ] by SMART
  • Other resources with information on 2ZT5
  • Community annotation for 2ZT5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science