2ZU6 Hydrolase date Oct 13, 2008
title Crystal Structure Of The Eif4a-Pdcd4 Complex
authors Y.Cho, J.H.Chang, S.Y.Sohn
compound source
Molecule: Eukaryotic Initiation Factor 4a-I
Chain: A, C, D, F
Fragment: Unp Residues 20-406
Synonym: Eif-4a-I, Eif4a-I, Atp-Dependent Rna Helicase Eif4a-1;
Ec: 3.6.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eif4a1, Ddx2a, Eif4a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a

Molecule: Programmed Cell Death Protein 4
Chain: B, E
Fragment: Unp Residues 163-469
Synonym: Nuclear Antigen H731-Like, Neoplastic Transformation Inhibitor Protein, Protein 19715a;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pdcd4, H731
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a
symmetry Space Group: P 21 21 2
R_factor 0.248 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
156.893 165.384 100.424 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand ACY, EDO, MSE enzyme Hydrolase E.C.3.6.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
E, B


F, A, D, C


Primary referenceCrystal structure of the eIF4A-PDCD4 complex., Chang JH, Cho YH, Sohn SY, Choi JM, Kim A, Kim YC, Jang SK, Cho Y, Proc Natl Acad Sci U S A. 2009 Feb 9. PMID:19204291
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (313 Kb) [Save to disk]
  • Biological Unit Coordinates (2zu6.pdb1.gz) 161 Kb
  • Biological Unit Coordinates (2zu6.pdb2.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 2ZU6
  • CSU: Contacts of Structural Units for 2ZU6
  • Likely Quarternary Molecular Structure file(s) for 2ZU6
  • Structure Factors (415 Kb)
  • Retrieve 2ZU6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZU6 from S2C, [Save to disk]
  • Re-refined 2zu6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZU6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZU6
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ZU6, from MSDmotif at EBI
  • Fold representative 2zu6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zu6_D] [2zu6_F] [2zu6_C] [2zu6_B] [2zu6] [2zu6_A] [2zu6_E]
  • SWISS-PROT database: [P60842] [Q53EL6]
  • Domain organization of [IF4A1_HUMAN] [PDCD4_HUMAN] by SWISSPFAM
  • Domains found in 2ZU6: [DEXDc] [HELICc] [MA3 ] by SMART
  • Other resources with information on 2ZU6
  • Community annotation for 2ZU6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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