2ZV2 Transferase Transferase Inhibitor date Oct 31, 2008
title Crystal Structure Of Human Calciumcalmodulin-Dependent Prot Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-60
authors S.Yoshikawa, M.Kukimoto-Niino, M.Shirouzu, A.Suzuki, S.Lee, Y.Min S.Yokoyama, Riken Structural Genomicsproteomics Initiative
compound source
Molecule: Calciumcalmodulin-Dependent Protein Kinase Kinas
Chain: A
Fragment: Kinase Domain
Synonym: Calciumcalmodulin-Dependent Protein Kinase Kinase Cam-Kinase Kinase Beta, Cam-Kk Beta, Camkk Beta;
Ec: 2.7.11.17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Cell Free Protein Synthesis
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Px070406-05
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.368 77.153 84.332 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 609 BindingDB enzyme Transferase E.C.2.7.11.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the CA2+/calmodulin-dependent protein kinase kinase in complex with the inhibitor STO-609., Kukimoto-Niino M, Yoshikawa S, Takagi T, Ohsawa N, Tomabechi Y, Terada T, Shirouzu M, Suzuki A, Lee S, Yamauchi T, Okada-Iwabu M, Iwabu M, Kadowaki T, Minokoshi Y, Yokoyama S, J Biol Chem. 2011 Apr 19. PMID:21504895
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (2zv2.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 2ZV2
  • CSU: Contacts of Structural Units for 2ZV2
  • Structure Factors (131 Kb)
  • Retrieve 2ZV2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZV2 from S2C, [Save to disk]
  • Re-refined 2zv2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZV2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZV2
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ZV2, from MSDmotif at EBI
  • Fold representative 2zv2 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zv2] [2zv2_A]
  • SWISS-PROT database: [Q96RR4]
  • Domain organization of [KKCC2_HUMAN] by SWISSPFAM
  • Domain found in 2ZV2: [S_TKc ] by SMART
  • Other resources with information on 2ZV2
  • Community annotation for 2ZV2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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