OCA Atlas for 2ZZS

2ZZS

Electron Transport

date

Feb 24, 2009

title

Crystal Structure Of Cytochrome C554 From Vibrio Parahaemoly Strain Rimd2210633

authors

H.Akazaki, F.Kawai, Y.Kumaki, K.Sekine, W.Hakamata, T.Nishio, S.Y T.Oku

compound

source

Molecule: Cytochrome C554
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X, Y, Z, 1, 2, 3, 4, 5, 6;
Engineered: Yes

Organism_scientific: Vibrio Parahaemolyticus
Organism_taxid: 223926
Strain: Rimd2210633
Gene: Vp2300
Expression_system: Escherichia Coli
Expression_system_taxid: 562

symmetry

Space Group: P 1

R_factor

0.193

R_Free

0.242

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
84.949	87.612	103.847	71.50	72.98	83.68

method

X-Ray Diffraction

resolution

1.80 Å

ligand

GOL, HEC

enzyme

Gene
Ontology

Chain	Function	Process	Component
S, F, T, N, K, Y, E, 2, V, Z, Q, 1, M, C, L, 6, A, O, J, W, X, 3, P, B, H, 4, D, R, I, G, U, 5

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (442 Kb) [Save to disk]

Biological Unit Coordinates (2zzs.pdb1.gz) 21 Kb

Biological Unit Coordinates (2zzs.pdb2.gz) 21 Kb

Biological Unit Coordinates (2zzs.pdb3.gz) 21 Kb

Biological Unit Coordinates (2zzs.pdb4.gz) 21 Kb

Biological Unit Coordinates (2zzs.pdb5.gz) 21 Kb

Biological Unit Coordinates (2zzs.pdb6.gz) 21 Kb

Biological Unit Coordinates (2zzs.pdb7.gz) 21 Kb

Biological Unit Coordinates (2zzs.pdb8.gz) 21 Kb

Biological Unit Coordinates (2zzs.pdb9.gz) 21 Kb

LPC: Ligand-Protein Contacts for 2ZZS

CSU: Contacts of Structural Units for 2ZZS

Structure Factors (3375 Kb)

Retrieve 2ZZS in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 2ZZS from S2C, [Save to disk]

Re-refined 2zzs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2ZZS in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2ZZS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 2ZZS, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2zzs_1] [2zzs_L] [2zzs_2] [2zzs_6] [2zzs_W] [2zzs_H] [2zzs_S] [2zzs_N] [2zzs_E] [2zzs_O] [2zzs_4] [2zzs_Y] [2zzs_R] [2zzs_G] [2zzs_F] [2zzs_P] [2zzs_K] [2zzs_U] [2zzs] [2zzs_D] [2zzs_J] [2zzs_X] [2zzs_3] [2zzs_A] [2zzs_B] [2zzs_I] [2zzs_T] [2zzs_V] [2zzs_Z] [2zzs_C] [2zzs_M] [2zzs_Q] [2zzs_5]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 2ZZS

Community annotation for 2ZZS at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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