2ZZU Hydrolase Blood Clotting date Feb 25, 2009
title Human Factor Viia-Tissue Factor Complexed With Ethylsulfonam (3-Carboxybenzyloxy)-Trp-Gln-P-Aminobenzamidine
authors S.Kadono, A.Sakamoto, Y.Kikuchi, M.Oh-Eda, N.Yabuta, T.Koga, K.Hat T.Shiraishi, M.Haramura, H.Sato, M.Ohta, T.Kozono
compound source
Molecule: Factor Vii Light Chain
Chain: L
Fragment: Unp Residues 61-212
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin;
Ec: 3.4.21.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F7
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell: Cho

Molecule: Factor Vii Heavy Chain
Chain: H
Fragment: Unp Residues 213-466
Synonym: Serum Prothrombin Conversion Accelerator, Spca, Proconvertin;
Ec: 3.4.21.21
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F7
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_cell: Cho

Molecule: Tissue Factor
Chain: T
Fragment: Unp Residues 33-250
Synonym: Tf, Coagulation Factor III, Thromboplastin
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: F3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm-109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk223-3
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.400 82.220 123.470 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand 359, BGC, CA, CGU, FUC enzyme Hydrolase E.C.3.4.21.21 BRENDA
Primary referenceDesign and synthesis of peptidomimetic factor VIIa inhibitors., Shiraishi T, Kadono S, Haramura M, Kodama H, Ono Y, Iikura H, Esaki T, Koga T, Hattori K, Watanabe Y, Sakamoto A, Yoshihashi K, Kitazawa T, Esaki K, Ohta M, Sato H, Kozono T, Chem Pharm Bull (Tokyo). 2010 Jan;58(1):38-44. PMID:20045964
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (2zzu.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 2ZZU
  • CSU: Contacts of Structural Units for 2ZZU
  • Likely Quarternary Molecular Structure file(s) for 2ZZU
  • Structure Factors (240 Kb)
  • Retrieve 2ZZU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ZZU from S2C, [Save to disk]
  • Re-refined 2zzu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2ZZU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2ZZU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2ZZU, from MSDmotif at EBI
  • Fold representative 2zzu from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2zzu_T] [2zzu_H] [2zzu] [2zzu_L]
  • SWISS-PROT database: [P08709] [P13726]
  • Domain organization of [FA7_HUMAN] [TF_HUMAN] by SWISSPFAM
  • Domains found in 2ZZU: [EGF] [EGF_CA] [GLA] [Tryp_SPc ] by SMART
  • Alignments of the sequence of 2ZZU with the sequences similar proteins can be viewed for 2ZZU's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [FA7_HUMAN] [TF_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 2ZZU
  • Community annotation for 2ZZU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science