2ALG Lipid Transport date Aug 05, 2005
title Crystal Structure Of Peach Pru P3, The Prototypic Member Of Of Plant Non-Specific Lipid Transfer Protein Pan-Allergens
authors N.Pasquato, R.Berni, C.Folli, S.Folloni, M.Cianci, S.Pantano, J.He G.Zanotti
compound source
Molecule: Non-Specific Lipid Transfer Protein
Chain: A, B
Engineered: Yes
 Organism_scientific: Prunus Persica
Organism_common: Peach
Organism_taxid: 3760
Gene: Ltp
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21-De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11b
symmetry Space Group: P 65 2 2
R_factor 0.204 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.378 102.378 77.295 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand DAO, HP6, P6G, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structure of Peach Pru p 3, the Prototypic Member of the Family of Plant Non-specific Lipid Transfer Protein Pan-allergens., Pasquato N, Berni R, Folli C, Folloni S, Cianci M, Pantano S, Helliwell JR, Zanotti G, J Mol Biol. 2006 Feb 24;356(3):684-94. Epub 2005 Dec 7. PMID:16388823
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (36 Kb) [Save to disk]
  • Biological Unit Coordinates (2alg.pdb1.gz) 16 Kb
  • Biological Unit Coordinates (2alg.pdb2.gz) 16 Kb
  • Biological Unit Coordinates (2alg.pdb3.gz) 59 Kb
  • Biological Unit Coordinates (2alg.pdb4.gz) 59 Kb
  • Biological Unit Coordinates (2alg.pdb5.gz) 30 Kb
  • Biological Unit Coordinates (2alg.pdb6.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 2ALG
  • CSU: Contacts of Structural Units for 2ALG
  • Likely Quarternary Molecular Structure file(s) for 2ALG
  • Structure Factors (82 Kb)
  • Retrieve 2ALG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ALG from S2C, [Save to disk]
  • Re-refined 2alg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2ALG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ALG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ALG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2alg_B] [2alg_A] [2alg]
  • SWISS-PROT database: [P81402]
  • Domain organization of [NLTP1_PRUPE] by SWISSPFAM
  • Domain found in 2ALG: [AAI ] by SMART
    • Other resources with information on 2ALG
  • Community annotation for 2ALG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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