2ET8 Rna date Oct 27, 2005
title Complex Between Neamine And The 16s-Rrna A-Site
authors E.Westhof
compound source
Molecule: 5'-R(Cpgpcpgpupcpapcpapcpcpgpgpupg Upcpgpc)-3';
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Other_details: Escherichia Coli 16s Rrna A Site
symmetry Space Group: P 21 21 21
R_factor 0.265 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.055 47.310 85.343 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand XXX enzyme
Primary referenceCrystal structures of complexes between aminoglycosides and decoding A site oligonucleotides: role of the number of rings and positive charges in the specific binding leading to miscoding., Francois B, Russell RJ, Murray JB, Aboul-ela F, Masquida B, Vicens Q, Westhof E, Nucleic Acids Res. 2005 Oct 7;33(17):5677-90. Print 2005. PMID:16214802
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (2et8.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 2ET8
  • CSU: Contacts of Structural Units for 2ET8
  • Likely Quarternary Molecular Structure file(s) for 2ET8
  • Structure Factors (32 Kb)
  • Retrieve 2ET8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2ET8 from S2C, [Save to disk]
  • Re-refined 2et8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2ET8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2ET8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2ET8, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2et8_A] [2et8] [2et8_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2ET8
  • Community annotation for 2ET8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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