2J28 MODEL OF E. COLI SRP BOUND TO 70S RNCS date
authors Halic, M., Blau, M., Becker, T., Mielke, T., Pool, M.R., Wild, K., Sinning, I., Beckmann, R.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 8.00
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
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    Primary referenceFollowing the signal sequence from ribosomal tunnel exit to signal recognition particle., Halic M, Blau M, Becker T, Mielke T, Pool MR, Wild K, Sinning I, Beckmann R, Nature. 2006 Nov 23;444(7118):507-11. Epub 2006 Oct 29. PMID:17086193
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1720 Kb) [Save to disk]
  • Biological Unit Coordinates (2j28.pdb1.gz) 1696 Kb
  • LPC: Ligand-Protein Contacts for 2J28
  • CSU: Contacts of Structural Units for 2J28
  • Likely Quarternary Molecular Structure file(s) for 2J28
  • Retrieve 2J28 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2J28 from S2C, [Save to disk]
  • View 2J28 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2J28
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2J28, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2j28_G] [2j28_U] [2j28_M] [2j28_0] [2j28_Z] [2j28_S] [2j28_I] [2j28_Q] [2j28_9] [2j28_N] [2j28_H] [2j28_3] [2j28_Y] [2j28_D] [2j28_V] [2j28_C] [2j28] [2j28_T] [2j28_2] [2j28_E] [2j28_X] [2j28_O] [2j28_W] [2j28_4] [2j28_J] [2j28_L] [2j28_P] [2j28_R] [2j28_8] [2j28_A] [2j28_B] [2j28_K] [2j28_7] [2j28_1] [2j28_F]
  • SWISS-PROT database: [P0A7J7] [P0AA10] [P0ADY3] [P02413] [P0ADY7] [P0AG44] [P0C018] [P0A7K6] [P0A7L3] [P0AG48] [P61175] [P0ADZ0] [P60624] [P68919] [P0A7L8] [P0A7M6] [P60422] [P0AG51] [P0A7M9] [P0A7N4] [P0A7N9] [P0A7P5] [P0A7Q2] [P0A7Q6] [P60438] [P60723] [P62399] [P0AG55] [P0A7R1] [P0AGD7]
  • Belongs to the general secretory pathway (sec) family according to TCDB.
  • Domain organization of [RL11_ECOLI] [RL13_ECOLI] [RL14_ECOLI] [RL15_ECOLI] [RL16_ECOLI] [RL17_ECOLI] [RL18_ECOLI] [RL19_ECOLI] [RL20_ECOLI] [RL21_ECOLI] [RL22_ECOLI] [RL23_ECOLI] [RL24_ECOLI] [RL25_ECOLI] [RL27_ECOLI] [RL29_ECOLI] [RL2_ECOLI] [RL30_ECOLI] [RL31_ECOLI] [RL32_ECOLI] [RL33_ECOLI] [RL34_ECOLI] [RL35_ECO57] [RL36_ECOLI] [RL3_ECOLI] [RL4_ECOLI] [RL5_ECOLI] [RL6_ECOLI] [RL9_ECOLI] [SRP54_ECOLI] by SWISSPFAM
  • Domains found in 2J28: [AAA] [KOW] [RL11] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [SRP54] [SRP54_N ] by SMART
  • Other resources with information on 2J28
  • Community annotation for 2J28 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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