2JFF Crystal structure of MurD ligase in complex with D-Glu containing sulfonamide inhibitor date
authors Kotnik, M., Humljan, J., Contreras-Martel, C., Oblak, M., Kristan, K., Herve, M., Blanot, D., Urleb, U., Gobec, S., Dessen, A., Solmajer, T.
compound source
symmetry
R_factor
R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.89
ligand KCX, LK2, SO4 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional characterization of enantiomeric glutamic acid derivatives as potential transition state analogue inhibitors of MurD ligase., Kotnik M, Humljan J, Contreras-Martel C, Oblak M, Kristan K, Herve M, Blanot D, Urleb U, Gobec S, Dessen A, Solmajer T, J Mol Biol. 2007 Jun 29;370(1):107-15. Epub 2007 May 4. PMID:17507028
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (2jff.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 2JFF
  • CSU: Contacts of Structural Units for 2JFF
  • Likely Quarternary Molecular Structure file(s) for 2JFF
  • Structure Factors (340 Kb)
  • Retrieve 2JFF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JFF from S2C, [Save to disk]
  • Re-refined 2jff structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2JFF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2JFF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2JFF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jff_A] [2jff]
  • SWISS-PROT database: [P14900]
  • Domain organization of [MURD_ECOLI] by SWISSPFAM
    • Other resources with information on 2JFF
  • Community annotation for 2JFF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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