2JIF Oxidoreductase date Feb 28, 2007
title Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogena (Acadsb)
authors A.C.W.Pike, V.Hozjan, C.Smee, F.H.Niesen, K.L.Kavanagh, C.Umeano, A.P.Turnbull, F.Von Delft, J.Weigelt, A.Edwards, C.H.Arrowsmith M.Sundstrom, U.Oppermann
compound source
Molecule: Shortbranched Chain Specific Acyl-Coa Dehydrogen
Chain: A, B, C, D
Fragment: Residues 52-432
Synonym: Acyl-Coa Dehydrogenase, Sbcad, 2-Methyl Branched C Coa Dehydrogenase, 2-Mebcad, 2-Methylbutyryl-Coenzyme A Dehydrogenase, 2-Methylbutyryl-Coa Dehydrogenase;
Ec: 1.3.99.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 31 2 1
R_factor 0.184 R_Free 0.209
length a length b length c angle alpha angle beta angle gamma
150.245 150.245 201.586 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand CL, COS, EDO, FAD enzyme Oxidoreductase E.C.1.3.99 BRENDA
A, D, C, B

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk]
  • Biological Unit Coordinates (2jif.pdb1.gz) 263 Kb
  • LPC: Ligand-Protein Contacts for 2JIF
  • CSU: Contacts of Structural Units for 2JIF
  • Likely Quarternary Molecular Structure file(s) for 2JIF
  • Structure Factors (2437 Kb)
  • Retrieve 2JIF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2JIF from S2C, [Save to disk]
  • Re-refined 2jif structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2JIF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2JIF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 2JIF, from MSDmotif at EBI
  • Fold representative 2jif from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2jif_D] [2jif_B] [2jif_A] [2jif_C] [2jif]
  • SWISS-PROT database: [P45954]
  • Domain organization of [ACDSB_HUMAN] by SWISSPFAM
  • Other resources with information on 2JIF
  • Community annotation for 2JIF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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